As for the suspension it has not been set up for me, so I know it is wrong. That is the next thing on my list to do. I talked to this guy at Metcalf who has a trailer that advertises suspension tuning. I think i'm gonna go with him.
As far as riding, I don't do, or plan to do, any MX. I just do trails.
I'll look into that flywheel weight thing. Thanks for the tip woodschick.
Tim
Phil from Aftershocks goes to Metcalf sometimes...was that the guy you saw?
He does good work, he did the suspension on my `87 CR125 when it was new, and he's helped me in the past with some issues on my stock GasGas shock. Just don't take it to him before a big AFM race weekend or you might have to wait awhile to get your stuff back

I dunno, maybe it's just me, but suspension is always the very first thing on my "to do" list for any motorcycle. No matter what kind of shiny new pipe you put on it, or other kind of money you might throw at a motorcycle to make it fast and trick, you can only go as fast as your suspension will allow. Start there and I'll bet you're feeling
much better about your purchase in no time.
In your comparison of the 125 and 250 YZ's, the number that really stands out to me is the difference in the length of the wheelbase. That, alone, is going to make a difference in nimbleness. Seat height difference is a non-issue. I can almost guarantee you your `97 YZ250 no longer has a seat height of 39", especially if you've never done anything to the suspension. As far as weight goes, 218lbs is pretty darned light. My WR250f weighed quite a bit more than that (as does my 450) and it was a piece of cake to ride. I'm guessing the size and weight won't be an issue for you once you get it set up to your liking. You simply cannot beat a 2-stroke when it comes to power-to-weight ratio. How tall are you?
As far as retarding the timing on the YZ, well, I wouldn't mess with it unless you're also messing with your compression, but it does change the power delivery. I've got a switch on my bars on my WR250F that can change the ignition timing from YZF to WR (less abrupt) when conditions get nasty. I don't think you'll need it once you take care of your suspension and get an easy-to-bolt-on flywheel weight, though.
Good luck with your bike and let us know how it goes.
WoodsChick