danc79, I don't think it's necessarily has to be user error. I shot a few to see if I could replicate the problem with my D200 and it looks like I can. I've put up my shots
here, all are center focus and defocused between shots. I hope those are large enough to see the detail.
For the first four shots I couldn't easily get it to focus on the same distance, so I had to re-auto-focus it a few times. For the second four I recomposed to make it easier for it to focus and it was better, but still not at the same distance every time. For the last eight I got closer so focusing differences would be more apparent; it also made it much more consistent. For the last four I switched to manual exposure after I noticed that the shutter speeds weren't being consistent.
Anybody know how autofocusing really works? I don't.